Last updated on 2024-06-06 05:57:46 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.2 | 51.09 | 682.66 | 733.75 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.2 | 45.09 | 470.87 | 515.96 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.2 | 883.24 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.2 | 859.05 | OK | |||
| r-devel-windows-x86_64 | 1.1.2 | 46.00 | 402.00 | 448.00 | OK | |
| r-patched-linux-x86_64 | 1.1.2 | 51.46 | 639.10 | 690.56 | OK | |
| r-release-linux-x86_64 | 1.1.2 | 41.81 | 630.61 | 672.42 | OK | |
| r-release-macos-arm64 | 1.1.2 | 182.00 | ERROR | |||
| r-release-macos-x86_64 | 1.1.2 | 312.00 | OK | |||
| r-release-windows-x86_64 | 1.1.2 | 44.00 | 397.00 | 441.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.1.2 | 162.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.1.2 | 291.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.1.2 | 61.00 | 552.00 | 613.00 | OK |
Version: 1.1.2
Check: examples
Result: ERROR
Running examples in ‘ENMTools-Ex.R’ failed
The error most likely occurred in:
> ### Name: enmtools.maxent
> ### Title: Takes an emtools.species object with presence and background
> ### points, and builds a maxent model
> ### Aliases: enmtools.maxent
>
> ### ** Examples
>
> if(check.extras("enmtools.maxent")) {
+ ## maxent is not working on some platforms so use try()
+ try(enmtools.maxent(iberolacerta.clade$species$monticola, env = euro.worldclim))
+ }
*** caught illegal operation ***
address 0x17feb2f78, cause 'illegal trap'
Traceback:
1: rJava::.jcall(mxe, "S", "fit", c("autorun", "-e", afn, "-o", dirout, "-s", pfn, args))
2: .local(x, p, ...)
3: maxent(x, p, ...)
4: maxent(x, p, ...)
5: .local(x, p, ...)
6: dismo::maxent(raster::stack(env), p = analysis.df[analysis.df$presence == 1, 1:2], a = analysis.df[analysis.df$presence == 0, 1:2], ...)
7: dismo::maxent(raster::stack(env), p = analysis.df[analysis.df$presence == 1, 1:2], a = analysis.df[analysis.df$presence == 0, 1:2], ...)
8: withVisible(...elt(i))
9: capture.output(this.mx <- dismo::maxent(raster::stack(env), p = analysis.df[analysis.df$presence == 1, 1:2], a = analysis.df[analysis.df$presence == 0, 1:2], ...))
10: enmtools.maxent(iberolacerta.clade$species$monticola, env = euro.worldclim)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(enmtools.maxent(iberolacerta.clade$species$monticola, env = euro.worldclim))
An irrecoverable exception occurred. R is aborting now ...
Flavor: r-release-macos-arm64
Version: 1.1.2
Check: for code/documentation mismatches
Result: WARN
Error: package or namespace load failed for 'ENMTools':
.onLoad failed in loadNamespace() for 'broom', details:
call: inDL(x, as.logical(local), as.logical(now), ...)
error: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.4/backports/libs/x64/backports.dll':
LoadLibrary failure: Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen.
Call sequence:
6: stop(msg, call. = FALSE, domain = NA)
5: value[[3L]](cond)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
3: tryCatchList(expr, classes, parentenv, handlers)
2: tryCatch({
attr(package, "LibPath") <- which.lib.loc
ns <- loadNamespace(package, lib.loc)
env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)
}, error = function(e) {
P <- if (!is.null(cc <- conditionCall(e)))
paste(" in", deparse(cc)[1L])
else ""
msg <- gettextf("package or namespace load failed for %s%s:\n %s",
sQuote(package), P, conditionMessage(e))
Execution halted
Flavor: r-release-windows-x86_64
Version: 1.1.2
Check: examples
Result: ERROR
Running examples in 'ENMTools-Ex.R' failed
The error most likely occurred in:
> ### Name: marginal.plots
> ### Title: marginal.plots Plots the marginal response of a model to an
> ### environmental variable with all other variables held at their mean in
> ### env
> ### Aliases: marginal.plots
> ### Keywords: enm plot response sdm
>
> ### ** Examples
>
> cyreni.glm <- enmtools.glm(iberolacerta.clade$species$cyreni,
+ f = pres ~ bio1 + bio12, euro.worldclim)
Error: std::bad_alloc
Execution halted
Flavor: r-release-windows-x86_64
Version: 1.1.2
Check: tests
Result: ERROR
Running 'testthat.R' [75s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(ENMTools)
Loading required package: dismo
Loading required package: raster
Loading required package: sp
>
> test_check("ENMTools")
[ FAIL 1 | WARN 0 | SKIP 2 | PASS 101 ]
══ Skipped tests (2) ═══════════════════════════════════════════════════════════
• On CRAN (2): 'test_ENMTools.R:168:3', 'test_ENMTools.R:211:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_ENMTools.R:112:3'): enmtools.model objects work for core methods ──
<std::bad_alloc/C++Error/error/condition>
Error: std::bad_alloc
Backtrace:
▆
1. └─ENMTools::enmtools.bc(cyreni, euro.worldclim, test.prop = 0) at test_ENMTools.R:112:3
2. └─ENMTools::clamp.env(this.df, env)
3. ├─methods (local) `[[<-`(`*tmp*`, i, value = `<SpatRstr[,162,1]>`)
4. └─terra (local) `[[<-`(`*tmp*`, i, value = `<SpatRstr[,162,1]>`)
5. └─terra (local) .local(x, i, ..., value)
6. └─terra:::.rast_replace(x, i[k], value[[k]], "`[[<-`")
7. ├─x[[(i + 1):nlyr(x)]]
8. └─x[[(i + 1):nlyr(x)]]
9. └─terra (local) .local(x, i, j = j, ...)
10. ├─base::subset(x, i, NSE = FALSE)
11. └─terra::subset(x, i, NSE = FALSE)
12. └─terra (local) .local(x, ...)
13. └─x@ptr$subset(subset - 1, opt)
[ FAIL 1 | WARN 0 | SKIP 2 | PASS 101 ]
Error: Test failures
Execution halted
Flavor: r-release-windows-x86_64