Last updated on 2024-06-06 05:58:14 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| BayesMixSurv | 13 | ||
| BSGW | 13 | ||
| CFC | 10 | 3 | |
| DBR | 1 | 12 | |
| EnsembleBase | 10 | 3 | |
| EnsembleCV | 13 | ||
| EnsemblePCReg | 1 | 12 | |
| EnsemblePenReg | 13 | ||
| MatchLinReg | 13 | ||
| MfUSampler | 13 | ||
| RegressionFactory | 10 | 3 | |
| SAMUR | 13 | ||
| sns | 13 |
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 10, OK: 3
Version: 1.2.0
Check: Rd files
Result: NOTE
checkRd: (-1) cfc.tbasis.Rd:23: Lost braces
23 | Assuming one-dimensional \code{p1} and \code{p2} for clarity, the algorithm calculates cumulative incidence function for cuase 1 using a recursive formula: \code{ci1[n+1] = ci1[n] + dci1[n]}, where \code{dci1[n] = 0.5*(p2[n] + p2[n+1])*(p1[n] - p1[n+1])}. The increment in cumulative incidence function for cause 2 is similarly calculated, \code{dci2[n] = 0.5*(p1[n] + p1[n+1])*(p2[n] - p2[n+1])}. These equations guarantee that \code{dci1[n] + dci2[n] = p1[n]*p2[n] - p1[n+1]*p2[n+1]}. Event-free probability is simply calculated as code{efp[n] = p1[n]*p2[n]}. Taken together, this numerical integration ensures that \code{efp[n+1] - efp[n] + dci1[n] + dci2[n] = 0}.
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Current CRAN status: NOTE: 1, OK: 12
Version: 1.4.1
Check: re-building of vignette outputs
Result: NOTE
Error(s) in re-building vignettes:
--- re-building ‘DBR.Rnw’ using Sweave
DBR 1.4.1
Bayesian Discretized Beta Regression for the Analysis of Ratings Data
Warning in cor.test.default(pain$severity, pain$interference, method = "spearman") :
Cannot compute exact p-value with ties
Warning in cor.test.default(pain$age, pain$interference, method = "spearman") :
Cannot compute exact p-value with ties
Warning in ks.test.default(pred_sample, pain$interference) :
p-value will be approximate in the presence of ties
Error: processing vignette 'DBR.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'DBR.tex' failed.
LaTeX errors:
! LaTeX Error: File `breqn.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.18 \usepackage
{atbegshi}% http://ctan.org/pkg/atbegshi^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘DBR.Rnw’
SUMMARY: processing the following file failed:
‘DBR.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-x86_64
Current CRAN status: NOTE: 10, OK: 3
Version: 1.0.2
Check: Rd files
Result: NOTE
checkRd: (-1) ALL.Regression.Config-class.Rd:39: Lost braces
39 | \item{code{shrinkage}:}{Object of class \code{"numeric"}, defining the shrinkage parameter applied to each tree in expansion.}
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: ERROR: 1, OK: 12
Version: 1.1.4
Check: whether the package can be unloaded cleanly
Result: WARN
[0.013s][warning][gc] Failed to reserve memory for new overflow mark stack with 4096 chunks and size 33554432B.
Error occurred during initialization of VM
Failed to allocate initial concurrent mark overflow mark stack.
Flavor: r-release-windows-x86_64
Version: 1.1.4
Check: whether the namespace can be loaded with stated dependencies
Result: WARN
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.
Probably some imports need to be declared in the NAMESPACE file.
Flavor: r-release-windows-x86_64
Version: 1.1.4
Check: whether the namespace can be unloaded cleanly
Result: WARN
During startup - Warning messages:
1: package 'utils' in options("defaultPackages") was not found
2: In .getClassesFromCache(Class) :
restarting interrupted promise evaluation
Error in get("#HAS_DUPLICATE_CLASS_NAMES", envir = .classTable) :
object '#HAS_DUPLICATE_CLASS_NAMES' not found
Calls: suppressMessages ... .newOrMultipleMethod -> .duplicateClassesExist -> get
Execution halted
Flavor: r-release-windows-x86_64
Version: 1.1.4
Check: dependencies in R code
Result: NOTE
Error: there is no package called 'Rcpp'
Call sequence:
11: find.package(package, lib.loc, verbose = verbose)
10: library.dynam(lib, package, package.lib)
9: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
8: asNamespace(ns)
7: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc,
.libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
6: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
5: asNamespace(ns)
4: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc,
.libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
3: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
2: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()),
versionCheck = vI[[i]]), from = package)
1: loadNamespace(package, lib.loc)
Execution halted
Flavor: r-release-windows-x86_64
Version: 1.1.4
Check: foreign function calls
Result: NOTE
OpenJDK 64-Bit Server VM warning: INFO: os::commit_memory(0x00000000e0000000, 536870912, 0) failed; error='Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen' (DOS error/errno=1455)
#
# There is insufficient memory for the Java Runtime Environment to continue.
# Native memory allocation (mmap) failed to map 536870912 bytes for Failed to commit area from 0x00000000e0000000 to 0x0000000100000000 of length 536870912.
# An error report file with more information is saved as:
# d:\Rcompile\CRANpkg\local\4.4\EnsemblePCReg\hs_err_pid189764.log
See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
Flavor: r-release-windows-x86_64
Version: 1.1.4
Check: R code for possible problems
Result: NOTE
During startup - Warning messages:
1: package 'utils' in options("defaultPackages") was not found
2: In .getClassesFromCache(Class) :
restarting interrupted promise evaluation
OpenJDK 64-Bit Server VM warning: INFO: os::commit_memory(0x00000000e0000000, 536870912, 0) failed; error='Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen' (DOS error/errno=1455)
#
# There is insufficient memory for the Java Runtime Environment to continue.
# Native memory allocation (mmap) failed to map 536870912 bytes for Failed to commit area from 0x00000000e0000000 to 0x0000000100000000 of length 536870912.
# An error report file with more information is saved as:
# d:\Rcompile\CRANpkg\local\4.4\EnsemblePCReg\hs_err_pid150872.log
Flavor: r-release-windows-x86_64
Version: 1.1.4
Check: Rd files
Result: WARN
invalid regular expression '[^[:space:]]'
problem found in 'epcreg.save.Rd'
Flavor: r-release-windows-x86_64
Version: 1.1.4
Check: for code/documentation mismatches
Result: WARN
Error occurred during initialization of VM
Could not reserve enough space in CodeHeap 'non-nmethods' (2496K)
Flavor: r-release-windows-x86_64
Version: 1.1.4
Check: examples
Result: ERROR
Running examples in 'EnsemblePCReg-Ex.R' failed
The error most likely occurred in:
> ### Name: epcreg
> ### Title: Principal-Components-Regression-Based (PCR) Integration of Base
> ### Learners for Ensemble Learning
> ### Aliases: epcreg
>
> ### ** Examples
>
> data(servo)
> myformula <- class~motor+screw+pgain+vgain
> perc.train <- 0.7
> index.train <- sample(1:nrow(servo), size = round(perc.train*nrow(servo)))
> data.train <- servo[index.train,]
> data.predict <- servo[-index.train,]
> ## to run longer test using all 5 default regression base learners
> ## try: est <- epcreg(myformula, data.train, ncores=2)
> est <- epcreg(myformula, data.train, ncores=2
+ , baselearner.control=epcreg.baselearner.control(
+ baselearners="knn"
+ , baselearner.configs = make.configs("knn"
+ , config.df = expand.grid(kernel = "rectangular"
+ , k = c(5, 10)))))
running in parallel mode, using 2 cores
CV training of base learners...
OpenJDK 64-Bit Server VM warning: INFO: os::commit_memory(0x00000000e0000000, 536870912, 0) failed; error='Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen' (DOS error/errno=1455)
#
# There is insufficient memory for the Java Runtime Environment to continue.
# Native memory allocation (mmap) failed to map 536870912 bytes for Failed to commit area from 0x00000000e0000000 to 0x0000000100000000 of length 536870912.
# An error report file with more information is saved as:
# d:\Rcompile\CRANpkg\local\4.4\EnsemblePCReg.Rcheck\hs_err_pid185644.log
Error in unserialize(node$con) : error reading from connection
Calls: epcreg ... FUN -> recvData -> recvData.SOCKnode -> unserialize
Execution halted
Error in serialize(data, node$con) : error writing to connection
Calls: <Anonymous> ... postNode -> sendData -> sendData.SOCKnode -> serialize
Flavor: r-release-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 10, OK: 3
Version: 0.7.4
Check: Rd files
Result: NOTE
checkRd: (-1) fbase1.binomial.Rd:32: Lost braces; missing escapes or markup?
32 | In all base log-likelihood functions, we have dropped any additive terms that are independent of the distribution parameter, e.g. constant terms or those terms that are dependent on the response variable only. This is done for computational efficiency. Therefore, these functions cannot be used to obtain the absolute values of log-likelihood functions but only in the context of optimization and/or sampling. Users can write thin wrappers around these functions to add the constant terms to the function value. (Derivatives do not need correction. For binomial family, all factorial terms are ignored since they only depend on \code{n} and {y}.)
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13