Last updated on 2024-06-13 05:59:34 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| BWGS | 10 | 3 | |
| expDB | 1 | 2 | 10 |
| rapsimng | 1 | 12 | |
| rtiddlywiki | 1 | 9 | 3 |
| weaana | 1 | 12 |
Current CRAN status: NOTE: 10, OK: 3
Version: 0.2.1
Check: Rd files
Result: NOTE
checkRd: (-1) bwgs.cv.Rd:27: Lost braces; missing escapes or markup?
27 | \item{geno}{Matrix (n x m) of genotypes for the training population: n lines with m markers. Genotypes should be coded {-1, 0, 1}. Missing data are allowed and coded as NA.}
| ^
checkRd: (-1) bwgs.cv.Rd:59: Lost braces; missing escapes or markup?
59 | \item{r2}{Coefficient of linkage disequilibrium (LD). Setting 0<r2<1 if the genotypic reduction method is in {LD or ANO+LD }.}
| ^
checkRd: (-1) bwgs.predict.Rd:25: Lost braces; missing escapes or markup?
25 | \item{geno_train}{Matrix (n x m) of genotypes for the training population: n lines with m markers. Genotypes should be coded as {-1, 0, 1, NA}. Missing data are allowed and coded as NA.}
| ^
checkRd: (-1) bwgs.predict.Rd:29: Lost braces; missing escapes or markup?
29 | \item{geno_target}{Matrix (z x m) of genotypes for the target population: z lines with the same m markers as in geno_train. Genotypes should be coded as {-1, 0, 1, NA}. Missing data are allowed and coded as NA. Other arguments are identical to those of bwgs.cv, except pop_reduct_method, nTimes and nFolds, since the prediction is run only once, using the whole training population for model estimation, then applied to the target population.}
| ^
checkRd: (-1) bwgs.predict.Rd:49: Lost braces; missing escapes or markup?
49 | \item{r2}{Coefficient of linkage disequilibrium (LD). Setting 0<r2<1 if the genotypic reduction method is in {LD or ANO+LD }.}
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Current CRAN status: ERROR: 1, NOTE: 2, OK: 10
Version: 0.1.0
Check: package dependencies
Result: ERROR
Packages required but not available:
'RSQLite', 'readxl', 'tibble', 'lubridate', 'dplyr', 'weaana',
'tidyr', 'tidyverse', 'reshape2', 'stringr'
Package suggested but not available for checking: ‘testthat’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.0
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘tidyverse’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Current CRAN status: ERROR: 1, OK: 12
Version: 0.4.4
Check: package dependencies
Result: ERROR
Packages required but not available: 'tibble', 'dplyr', 'RSQLite'
Packages suggested but not available for checking: 'testthat', 'tidyverse'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: ERROR: 1, NOTE: 9, OK: 3
Version: 0.1.0
Check: Rd files
Result: NOTE
checkRd: (-1) tw_options.Rd:22: Lost braces in \itemize; meant \describe ?
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Version: 0.1.0
Check: package dependencies
Result: ERROR
Package required but not available: ‘stringr’
Package suggested but not available for checking: ‘testthat’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: ERROR: 1, OK: 12
Version: 0.1.1
Check: package dependencies
Result: ERROR
Packages required but not available:
'reshape2', 'lubridate', 'dplyr', 'tibble'
Package suggested but not available for checking: ‘testthat’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-linux-x86_64-debian-gcc