Last updated on 2024-06-14 05:58:54 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| letsR | 1 | 1 | 11 |
Current CRAN status: ERROR: 1, NOTE: 1, OK: 11
Version: 5.0
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'testthat', 'devtools', 'dplyr', 'kableExtra', 'ggplot2'
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 5.0
Check: tests
Result: ERROR
Running ‘test-all.R’ [0s/0s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> library(testthat)
Error in library(testthat) : there is no package called 'testthat'
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 5.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘A-guide-to-transform-species-distributions-into-a-presence-absence-matrix-based.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/letsR.Rcheck/vign_test/letsR/vignettes/A-guide-to-transform-species-distributions-into-a-presence-absence-matrix-based_files/figure-html/unnamed-chunk-2-1.png
384x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 35648 bytes
Input file size = 35774 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27664
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27664
Output IDAT size = 27664 bytes (7984 bytes decrease)
Output file size = 27742 bytes (8032 bytes = 22.45% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/letsR.Rcheck/vign_test/letsR/vignettes/A-guide-to-transform-species-distributions-into-a-presence-absence-matrix-based_files/figure-html/unnamed-chunk-5-1.png
384x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 33580 bytes
Input file size = 33706 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26900
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26900
Output IDAT size = 26900 bytes (6680 bytes decrease)
Output file size = 26978 bytes (6728 bytes = 19.96% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/letsR.Rcheck/vign_test/letsR/vignettes/A-guide-to-transform-species-distributions-into-a-presence-absence-matrix-based_files/figure-html/unnamed-chunk-6-1.png
384x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 31305 bytes
Input file size = 31419 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25848
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25848
Output IDAT size = 25848 bytes (5457 bytes decrease)
Output file size = 25926 bytes (5493 bytes = 17.48% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/letsR.Rcheck/vign_test/letsR/vignettes/A-guide-to-transform-species-distributions-into-a-presence-absence-matrix-based_files/figure-html/unnamed-chunk-11-1.png
384x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 27731 bytes
Input file size = 27845 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21704
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21704
Output IDAT size = 21704 bytes (6027 bytes decrease)
Output file size = 21782 bytes (6063 bytes = 21.77% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/letsR.Rcheck/vign_test/letsR/vignettes/A-guide-to-transform-species-distributions-into-a-presence-absence-matrix-based_files/figure-html/unnamed-chunk-12-1.png
384x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 32595 bytes
Input file size = 32709 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26004
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26004
Output IDAT size = 26004 bytes (6591 bytes decrease)
Output file size = 26082 bytes (6627 bytes = 20.26% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/letsR.Rcheck/vign_test/letsR/vignettes/A-guide-to-transform-species-distributions-into-a-presence-absence-matrix-based_files/figure-html/unnamed-chunk-16-1.png
384x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 30643 bytes
Input file size = 30757 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24292
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24292
Output IDAT size = 24292 bytes (6351 bytes decrease)
Output file size = 24370 bytes (6387 bytes = 20.77% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/letsR.Rcheck/vign_test/letsR/vignettes/A-guide-to-transform-species-distributions-into-a-presence-absence-matrix-based_files/figure-html/unnamed-chunk-17-1.png
384x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 13813 bytes
Input file size = 14683 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12431
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12431
Output IDAT size = 12431 bytes (1382 bytes decrease)
Output file size = 12509 bytes (2174 bytes = 14.81% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/letsR.Rcheck/vign_test/letsR/vignettes/A-guide-to-transform-species-distributions-into-a-presence-absence-matrix-based_files/figure-html/unnamed-chunk-19-1.png
384x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 35651 bytes
Input file size = 35777 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29072
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29072
Output IDAT size = 29072 bytes (6579 bytes decrease)
Output file size = 29150 bytes (6627 bytes = 18.52% decrease)
--- finished re-building ‘A-guide-to-transform-species-distributions-into-a-presence-absence-matrix-based.Rmd’
--- re-building ‘Adding-variables-to-a-presenceabsence-object.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/letsR.Rcheck/vign_test/letsR/vignettes/Adding-variables-to-a-presenceabsence-object_files/figure-html/unnamed-chunk-3-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 50855 bytes
Input file size = 51005 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31336
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31336
Output IDAT size = 31336 bytes (19519 bytes decrease)
Output file size = 31414 bytes (19591 bytes = 38.41% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/letsR.Rcheck/vign_test/letsR/vignettes/Adding-variables-to-a-presenceabsence-object_files/figure-html/unnamed-chunk-4-1.png
384x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 37014 bytes
Input file size = 37140 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29369
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29369
Output IDAT size = 29369 bytes (7645 bytes decrease)
Output file size = 29447 bytes (7693 bytes = 20.71% decrease)
Quitting from lines 55-58 [unnamed-chunk-6] (Adding-variables-to-a-presenceabsence-object.Rmd)
Error: processing vignette 'Adding-variables-to-a-presenceabsence-object.Rmd' failed with diagnostics:
there is no package called 'dplyr'
--- failed re-building ‘Adding-variables-to-a-presenceabsence-object.Rmd’
--- re-building ‘cropping-and-subseting-your-presence-absence-matrix.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/letsR.Rcheck/vign_test/letsR/vignettes/cropping-and-subseting-your-presence-absence-matrix_files/figure-html/unnamed-chunk-1-1.png
960x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 66023 bytes
Input file size = 66197 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 55550
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 55550
Output IDAT size = 55550 bytes (10473 bytes decrease)
Output file size = 55628 bytes (10569 bytes = 15.97% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/letsR.Rcheck/vign_test/letsR/vignettes/cropping-and-subseting-your-presence-absence-matrix_files/figure-html/unnamed-chunk-2-1.png
960x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 86364 bytes
Input file size = 86562 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 69162
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 69162
Output IDAT size = 69162 bytes (17202 bytes decrease)
Output file size = 69240 bytes (17322 bytes = 20.01% decrease)
--- finished re-building ‘cropping-and-subseting-your-presence-absence-matrix.Rmd’
--- re-building ‘mapping-species-traits.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/letsR.Rcheck/vign_test/letsR/vignettes/mapping-species-traits_files/figure-html/r-1.png
384x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 33580 bytes
Input file size = 33706 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26900
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26900
Output IDAT size = 26900 bytes (6680 bytes decrease)
Output file size = 26978 bytes (6728 bytes = 19.96% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/letsR.Rcheck/vign_test/letsR/vignettes/mapping-species-traits_files/figure-html/unnamed-chunk-3-1.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 47835 bytes
Input file size = 47973 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38725
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38725
Output IDAT size = 38725 bytes (9110 bytes decrease)
Output file size = 38803 bytes (9170 bytes = 19.11% decrease)
Quitting from lines 60-61 [unnamed-chunk-4] (mapping-species-traits.Rmd)
Error: processing vignette 'mapping-species-traits.Rmd' failed with diagnostics:
there is no package called 'ggplot2'
--- failed re-building ‘mapping-species-traits.Rmd’
--- re-building ‘save-load-presenceabsence.Rmd’ using rmarkdown
--- finished re-building ‘save-load-presenceabsence.Rmd’
--- re-building ‘species-level-macroecological-analysis.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/letsR.Rcheck/vign_test/letsR/vignettes/species-level-macroecological-analysis_files/figure-html/r-1.png
384x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 33580 bytes
Input file size = 33706 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26900
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26900
Output IDAT size = 26900 bytes (6680 bytes decrease)
Output file size = 26978 bytes (6728 bytes = 19.96% decrease)
Quitting from lines 53-56 [unnamed-chunk-4] (species-level-macroecological-analysis.Rmd)
Error: processing vignette 'species-level-macroecological-analysis.Rmd' failed with diagnostics:
there is no package called 'dplyr'
--- failed re-building ‘species-level-macroecological-analysis.Rmd’
SUMMARY: processing the following files failed:
‘Adding-variables-to-a-presenceabsence-object.Rmd’
‘mapping-species-traits.Rmd’
‘species-level-macroecological-analysis.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 5.0
Check: installed package size
Result: NOTE
installed size is 5.3Mb
sub-directories of 1Mb or more:
data 2.2Mb
doc 1.5Mb
extdata 1.1Mb
Flavor: r-oldrel-macos-x86_64