Last updated on 2024-06-06 05:58:26 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| CongreveLamsdell2016 | 1 | 12 | |
| PlotTools | 13 | ||
| Quartet | 13 | ||
| Rogue | 13 | ||
| TBRDist | 13 | ||
| Ternary | 8 | 5 | |
| TotalCopheneticIndex | 13 | ||
| TreeDist | 13 | ||
| TreeSearch | 7 | 6 | |
| TreeTools | 5 | 5 | 3 |
Current CRAN status: ERROR: 1, OK: 12
Version: 1.0.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'Compare-methods.Rmd' using rmarkdown
Warning in system2(..., stdout = if (use_file_stdout()) f1 else FALSE, stderr = f2) :
'CreateProcess' failed to run 'C:\PROGRA~1\MiKTeX\miktex\bin\x64\pdflatex.exe -halt-on-error -interaction=batchmode "D:/RCompile/CRANpkg/local/4.4/CongreveLamsdell2016.Rcheck/vign_test/CongreveLamsdell2016/vignettes/Compare-methods.tex"'
! Entschuldigung, aber C:\PROGRA~1\MiKTeX\miktex\bin\x64\pdflatex.exe schlug fehl.
! Die Log-Datei enthält hoffentlich alle Informationen, um MiKTeX wieder in Gang zu bringen.
! C:\Users\CRAN\AppData\Local\MiKTeX\miktex\log\pdflatex.log
Error: processing vignette 'Compare-methods.Rmd' failed with diagnostics:
LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/CongreveLamsdell2016.Rcheck/vign_test/CongreveLamsdell2016/vignettes/Compare-methods.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Compare-methods.log for more info.
--- failed re-building 'Compare-methods.Rmd'
SUMMARY: processing the following files failed:
'Compare-methods.Rmd' 'Compare-node-supports.Rmd'
'Conduct-analyses.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-windows-x86_64
Version: 1.0.3
Check: PDF version of manual
Result: WARN
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Flavor: r-release-windows-x86_64
Version: 1.0.3
Check: PDF version of manual without index
Result: ERROR
Re-running with no redirection of stdout/stderr.
Flavor: r-release-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 13
Version: 1.0.2
Check: C++ specification
Result: NOTE
Specified C++11: please drop specification unless essential
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.0.2
Check: LazyData
Result: NOTE
'LazyData' is specified without a 'data' directory
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.0.2
Check: installed package size
Result: NOTE
installed size is 5.3Mb
sub-directories of 1Mb or more:
libs 5.1Mb
Flavor: r-oldrel-macos-arm64
Current CRAN status: NOTE: 8, OK: 5
Version: 2.3.1
Check: installed package size
Result: NOTE
installed size is 7.0Mb
sub-directories of 1Mb or more:
doc 5.9Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: NOTE: 13
Version: 2.7.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘TreeDistData’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 2.7.0
Check: installed package size
Result: NOTE
installed size is 5.9Mb
sub-directories of 1Mb or more:
doc 5.0Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: NOTE: 7, OK: 6
Version: 1.5.1
Check: installed package size
Result: NOTE
installed size is 5.6Mb
sub-directories of 1Mb or more:
datasets 1.6Mb
doc 1.3Mb
libs 1.0Mb
Flavors: r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: ERROR: 5, NOTE: 5, OK: 3
Version: 1.10.0
Check: Rd files
Result: NOTE
checkRd: (-1) ReadTntTree.Rd:37: Lost braces
37 | \link{TNTOrder}{\code{tnt} order},
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64
Version: 1.11.0
Check: tests
Result: ERROR
Running ‘spelling.R’
Running ‘testthat.R’ [83s/267s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library("testthat")
> library("TreeTools", quietly = TRUE, warn.conflicts = FALSE)
>
> suppressPackageStartupMessages(test_check("TreeTools"))
[ FAIL 1 | WARN 1 | SKIP 7 | PASS 3437 ]
══ Skipped tests (7) ═══════════════════════════════════════════════════════════
• On CRAN (7): 'test-RoguePlot.R:50:3', 'test-RoguePlot.R:72:3',
'test-RoguePlot.R:138:3', 'test-Support.R:39:3',
'test-helper_functions.R:17:3', 'test-mst.R:36:3', 'test-tree_display.R:49:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-TotalCopheneticIndex.R:50:3'): Expectations are correct ──────
mean(unif) (`actual`) not equal to TCIContext(10)$uniform.expected (`expected`).
`actual`: 80
`expected`: 76
[ FAIL 1 | WARN 1 | SKIP 7 | PASS 3437 ]
Deleting unused snapshots:
• RoguePlot/rogueplot-trees2.svg
• Support/labelsplits-nameless.svg
• Support/labelsplits-names.svg
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.11.0
Check: installed package size
Result: NOTE
installed size is 5.5Mb
sub-directories of 1Mb or more:
R 1.1Mb
libs 3.4Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.11.0
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [17s/19s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-TotalCopheneticIndex.R:50:3'): Expectations are correct ──────
mean(unif) (`actual`) not equal to TCIContext(10)$uniform.expected (`expected`).
`actual`: 80
`expected`: 76
[ FAIL 1 | WARN 1 | SKIP 7 | PASS 3437 ]
Deleting unused snapshots:
• RoguePlot/rogueplot-trees2.svg
• Support/labelsplits-nameless.svg
• Support/labelsplits-names.svg
Error: Test failures
Execution halted
Flavor: r-release-macos-arm64
Version: 1.11.0
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [32s/62s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-TotalCopheneticIndex.R:50:3'): Expectations are correct ──────
mean(unif) (`actual`) not equal to TCIContext(10)$uniform.expected (`expected`).
`actual`: 80
`expected`: 76
[ FAIL 1 | WARN 1 | SKIP 7 | PASS 3437 ]
Deleting unused snapshots:
• RoguePlot/rogueplot-trees2.svg
• Support/labelsplits-nameless.svg
• Support/labelsplits-names.svg
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.11.0
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [18s/19s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-TotalCopheneticIndex.R:50:3'): Expectations are correct ──────
mean(unif) (`actual`) not equal to TCIContext(10)$uniform.expected (`expected`).
`actual`: 80
`expected`: 76
[ FAIL 1 | WARN 1 | SKIP 7 | PASS 3437 ]
Deleting unused snapshots:
• RoguePlot/rogueplot-trees2.svg
• Support/labelsplits-nameless.svg
• Support/labelsplits-names.svg
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 1.11.0
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [29s/49s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-TotalCopheneticIndex.R:50:3'): Expectations are correct ──────
mean(unif) (`actual`) not equal to TCIContext(10)$uniform.expected (`expected`).
`actual`: 80
`expected`: 76
[ FAIL 1 | WARN 1 | SKIP 7 | PASS 3437 ]
Deleting unused snapshots:
• RoguePlot/rogueplot-trees2.svg
• Support/labelsplits-nameless.svg
• Support/labelsplits-names.svg
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64