Last updated on 2024-06-13 05:59:50 CEST.
| Package | ERROR | WARN | NOTE | OK |
|---|---|---|---|---|
| CommonJavaJars | 1 | 7 | 5 | |
| Crossover | 1 | 1 | 11 | |
| gMCP | 1 | 12 | ||
| mutoss | 1 | 12 | ||
| mutossGUI | 13 |
Current CRAN status: WARN: 1, NOTE: 7, OK: 5
Version: 1.1-0
Check: installed package size
Result: NOTE
installed size is 7.0Mb
sub-directories of 1Mb or more:
java 6.7Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.1-0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘CommonJavaJars.Rnw’ using knitr
Error: processing vignette 'CommonJavaJars.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'CommonJavaJars.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.89 \hlkwd{.jpackage}\hldef
{(}\hlsng{"CommonJavaJars"}\hldef{,} \hlkwc{jars...
?
! Emergency stop.
l.89
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘CommonJavaJars.Rnw’
SUMMARY: processing the following file failed:
‘CommonJavaJars.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-x86_64
Current CRAN status: ERROR: 1, WARN: 1, OK: 11
Version: 0.1-22
Check: package dependencies
Result: ERROR
Package required but not available: ‘ggplot2’
Package suggested but not available for checking: ‘testthat’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1-22
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘Crossover.Rnw’ using knitr
Error: processing vignette 'Crossover.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'Crossover.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.242 \hlkwd{getDesign}\hldef
{(}\hlsng{"williams3t"}\hldef{)}
?
! Emergency stop.
! Emergency stop.
l.242
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘Crossover.Rnw’
SUMMARY: processing the following file failed:
‘Crossover.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-x86_64
Current CRAN status: WARN: 1, OK: 12
Version: 0.8-17
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘gMCP.Rnw’ using knitr
Error: processing vignette 'gMCP.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'gMCP.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.333 \hlkwd{library}\hldef
{(gMCP)}
?
! Emergency stop.
! Emergency stop.
l.333
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘gMCP.Rnw’
--- re-building ‘parametric.Rnw’ using knitr
Error: processing vignette 'parametric.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'parametric.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.219 \hldef
{Gm} \hlkwb{<-} \hlkwd{matrix}\hldef{(}\hlnum{0}\hldef{,}\hlkwc{...
?
! Emergency stop.
l.219
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘parametric.Rnw’
SUMMARY: processing the following files failed:
‘gMCP.Rnw’ ‘parametric.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-x86_64
Current CRAN status: ERROR: 1, OK: 12
Version: 0.1-13
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking: 'qvalue', 'testthat'
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1-13
Check: examples
Result: ERROR
Running examples in ‘mutoss-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Qvalue
> ### Title: Storey's (2001) q-value Procedure...
> ### Aliases: Qvalue
>
> ### ** Examples
> pval <- c(runif(50), runif(50, 0, 0.01))
> result <- Qvalue(pval)
Loading required package: qvalue
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘qvalue’
Package qvalue is required - should we install it?
Error in requireLibrary("qvalue") :
Required package qvalue should not be installed
Calls: Qvalue -> requireLibrary
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1-13
Check: tests
Result: ERROR
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
Error in library(testthat) : there is no package called 'testthat'
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: OK: 13