assign.clusters	assign.clusters
cluster.bic	cluster.bic
count.parameters	count.parameters
emission.heatmap	emission.heatmap
hmm.clust	hmm.clust
model.ll	model.ll
partition.bic	partition.bic
select.seeds	select.seeds
seq2hmm.ll	seq2hmm.ll
size.search	size.search
smooth.hmm	smooth.hmm
smooth.probabilities	smooth.probabilities
transition.heatmap	transition.heatmap
