addControl	e33-addControl
addControl,ANY-method	e33-addControl
addControl,CancerEngine-method	e33-addControl
addControl,CancerModel-method	e33-addControl
addControl-method	e33-addControl
alterMean	e20-alterMean-method
alterMean,ANY-method	e20-alterMean-method
alterMean,Engine-method	e01-Engine-class
alterMean,IndependentLogNormal-method	e04-IndependentLogNormal-class
alterMean,IndependentNormal-method	e03-IndependentNormal-class
alterMean,MVN-method	e05-MVN-class
alterMean-method	e20-alterMean-method
alterSD	e20-alterMean-method
alterSD,ANY-method	e20-alterMean-method
alterSD,Engine-method	e01-Engine-class
alterSD,IndependentLogNormal-method	e04-IndependentLogNormal-class
alterSD,IndependentNormal-method	e03-IndependentNormal-class
alterSD,MVN-method	e05-MVN-class
alterSD-method	e20-alterMean-method
BlockHyperParameters	e15-BlockHyperParameters-class
BlockHyperParameters-class	e15-BlockHyperParameters-class
blur	e21-blur-method
blur,ANY-method	e21-blur-method
blur,NoiseModel-method	e09-NoiseModel-class
blur-method	e21-blur-method
CancerEngine	e14-CancerEngine-class
CancerEngine-class	e14-CancerEngine-class
CancerModel	e13-CancerModel-class
CancerModel-class	e13-CancerModel-class
ClinicalEngine	e14-CancerEngine-class
ClinicalNoiseModel	e30-clinicalNoiseModel
correl	e05-MVN-class
covar	e05-MVN-class
Engine	e01-Engine-class
Engine-class	e01-Engine-class
EngineWithActivity	e02-EngineWithActivity-class
EngineWithActivity-class	e02-EngineWithActivity-class
getDaisyTypes	e31-setDataTypes
getDataTypes	e31-setDataTypes
IndependentLogNormal	e04-IndependentLogNormal-class
IndependentLogNormal-class	e04-IndependentLogNormal-class
IndependentNormal	e03-IndependentNormal-class
IndependentNormal-class	e03-IndependentNormal-class
invGammaMultiple	e08-transforms
makeBlockStructure	e15-BlockHyperParameters-class
makeDataTypes	e31-setDataTypes
MixedTypeEngine	e32-mixedTypeEngine
MixedTypeEngine-class	e32-mixedTypeEngine
MVN	e05-MVN-class
MVN-class	e05-MVN-class
ncol,CancerModel-method	e13-CancerModel-class
nComponents	e23-nComponents-method
nComponents,ANY-method	e23-nComponents-method
nComponents,CancerEngine-method	e14-CancerEngine-class
nComponents,Engine-method	e01-Engine-class
nComponents-method	e23-nComponents-method
nHitsPerPattern	e13-CancerModel-class
NoiseModel	e09-NoiseModel-class
NoiseModel-class	e09-NoiseModel-class
normalOffset	e08-transforms
NormalVsCancerEngine	e16-normalVcancer
NormalVsCancerModel	e16-normalVcancer
nPatterns	e13-CancerModel-class
nPossibleHits	e13-CancerModel-class
nrow,CancerEngine-method	e14-CancerEngine-class
nrow,CancerModel-method	e13-CancerModel-class
nrow,Engine-method	e01-Engine-class
nrow,IndependentLogNormal-method	e04-IndependentLogNormal-class
nrow,IndependentNormal-method	e03-IndependentNormal-class
nrow,MVN-method	e05-MVN-class
outcomeCoefficients	e13-CancerModel-class
rand	e22-rand-method
rand,ANY-method	e22-rand-method
rand,CancerEngine-method	e14-CancerEngine-class
rand,CancerModel-method	e13-CancerModel-class
rand,Engine-method	e01-Engine-class
rand,EngineWithActivity-method	e02-EngineWithActivity-class
rand,IndependentLogNormal-method	e04-IndependentLogNormal-class
rand,IndependentNormal-method	e03-IndependentNormal-class
rand,MixedTypeEngine-method	e32-mixedTypeEngine
rand,MVN-method	e05-MVN-class
rand,SurvivalModel-method	e11-SurvivalModel-class
rand-method	e22-rand-method
summary,CancerEngine-method	e14-CancerEngine-class
summary,CancerModel-method	e13-CancerModel-class
summary,Engine-method	e01-Engine-class
summary,EngineWithActivity-method	e02-EngineWithActivity-class
summary,IndependentLogNormal-method	e04-IndependentLogNormal-class
summary,IndependentNormal-method	e03-IndependentNormal-class
summary,MixedTypeEngine-method	e32-mixedTypeEngine
summary,MVN-method	e05-MVN-class
summary,NoiseModel-method	e09-NoiseModel-class
survivalCoefficients	e13-CancerModel-class
SurvivalModel	e11-SurvivalModel-class
SurvivalModel-class	e11-SurvivalModel-class
