clean_DNA_file          Clean DNA file
clean_DNA_sequence      Clean DNA sequence
clean_RNA_file          Clean RNA file
clean_RNA_sequence      Clean RNA sequence
clean_sequence          Clean DNA or RNA sequence
count_bases             Count the number of A's, C's, G's, and T's in a
                        DNA sequence
count_seq_pattern       Count frequency of a pattern in a sequence
dna_to_protein          Translation of a DNA sequence
dna_to_rna              Transcription of a DNA sequence
fastq_to_fasta          Convert a FASTQ file to a FASTA file
gc_content              Calculate GC content of a DNA sequence
gc_content_file         GC content of sequences in a multi FASTA file
read.fasta_to_df        Read a fasta file into a dataframe and assign
                        to the environment
read.fasta_to_list      Read a fasta file into a list and assign to the
                        environment
read.fastq_to_df        Read a Fastq file and store it as a dataframe
read.fastq_to_list      Read a Fastq file and store it as a list
reverse_complement      Generate Reverse Complement of DNA sequence
rna_reverse_complement
                        Generate Reverse Complement of DNA sequence
rna_to_dna              Reverse Transcription of a RNA sequence
rna_to_protein          Translation of a RNA sequence
write.df_to_fasta       Write a data frame to a fasta file
write.df_to_fastq       Write a FASTQ file from a dataframe of reads
write.dna_to_rna        Convert DNA file to RNA file
write.list_to_fasta     Write a list of sequences to a FASTA file
write.list_to_fastq     Write a list of sequence_bases and quality
                        scores to a FASTQ file
write.rna_to_dna        Convert RNA file to DNA file
