analysis_complete       Is the analysis complete?
analyze                 Run analysis on a ddPCR plate
clusters                Potential droplet clusters for a plate type
custom_thresholds       Plate type: custom thresholds
ddpcr_plate             Plate type: ddPCR plate
fam_positive_pnpp       Plate type: FAM-positive PNPP
hex_positive_pnpp       Plate type: HEX-positive PNPP
launch                  Run the interactive analysis tool (Shiny app)
                        in a web browser
load_plate              Load a previously saved ddPCR plate
name                    Plate name
new_plate               Create a new ddPCR plate
next_step               Run the next step in an analysis
params                  Plate parameters
plate_data              Plate data (droplets data)
plate_meta              Plate metadata
plate_types             Supported plate types
plot.custom_thresholds
                        Plot a ddPCR plate of type custom thresholds
plot.ddpcr_plate        Plot a ddPCR plate
plot.wildtype_mutant_pnpp
                        Plot a ddPCR plate of type wildtype/mutant PNPP
pnpp_experiment         Plate type: PNPP experiment
reset                   Reset a plate
sample_data             Get sample data
save_plate              Save a ddPCR plate
set_default_params      Reset plate parameters to their defaults
steps                   Analysis steps of a ddPCR plate
subset.ddpcr_plate      Subsetting a ddPCR plate
thresholds              Get/set the thresholds
type                    Plate type
well_info               Get metadata info of a well
wells_mutant            Get mutant wells
wells_negative          Get negative wells
wells_positive          Get positive wells
wells_success           Get successful/failed wells
wells_used              Get wells used in a ddPCR plate
wells_wildtype          Get wildtype wells
wildtype_mutant_pnpp    Plate type: wildtype/mutant PNPP
x_threshold             Get/set the X threshold
x_var                   Get/set the X/Y variable (dye name)
y_threshold             Get/set the Y threshold
