Package: fbar
Type: Package
Title: An Extensible Approach to Flux Balance Analysis
Version: 0.6.0
Date: 2020-09-02
Authors@R: person("Max", "Conway", email = "conway.max1@gmail.com",
                  role = c("aut", "cre"))
Description: A toolkit for Flux Balance Analysis and related
    metabolic modeling techniques. Functions are provided for: parsing
    models in tabular format, converting parsed metabolic models to input
    formats for common linear programming solvers, and
    evaluating and applying gene-protein-reaction mappings. In addition, there
    are wrappers to parse a model, select a solver, find the metabolic fluxes,
    and return the results applied to the original model. Compared to other
    packages in this field, this package puts a much heavier focus on
    providing reusable components that can be used in the design of new
    implementation of new techniques, in particular those that involve large
    parameter sweeps. For a background on the theory, see What is Flux Balance 
    Analysis <doi:10.1038/nbt.1614>.
License: GPL-3
URL: http://maxconway.github.io/fbar/,
        https://github.com/maxconway/fbar
BugReports: https://github.com/maxconway/fbar/issues
Depends: R (>= 3.3.0)
Imports: assertthat, dplyr, magrittr, Matrix, purrr, rlang, ROI,
        ROI.plugin.ecos, stringr, tibble, tidyr
Suggests: spelling, jsonlite, curl, knitr, rmarkdown, testthat
VignetteBuilder: knitr
RoxygenNote: 7.1.1
LazyData: true
Language: en-GB
NeedsCompilation: no
Packaged: 2020-09-02 13:16:23 UTC; max
Author: Max Conway [aut, cre]
Maintainer: Max Conway <conway.max1@gmail.com>
Repository: CRAN
Date/Publication: 2020-09-02 13:50:03 UTC
Built: R 4.2.0; ; 2023-07-11 00:31:57 UTC; unix
