ABH_pi0_est             Lowest Slope Line (LSL) method of Hochberg and
                        Benjamini for estimating pi0
BH                      Benjamini-Hochberg (1995) linear step-up
                        procedure
BL                      Benjamini-Liu (1999) step-down procedure
BR_pi0_est              Estimate of pi0 using the one-step
                        Blanchard-Roquain procedure
BY                      Benjamini-Yekutieli (2001) step-up procedure
BlaRoq                  Blanchard-Roquain (2008) step-up Procedure for
                        arbitrary dependent p-Values...
ErrorControl-class      Class ErrorControl
Mutoss-class            Class Mutoss
MutossMethod-class      Class MutossMethod
Qvalue                  Storey's (2001) q-value Procedure...
SD                      A general step-down procedure.
SU                      A general step-up procedure.
SUD                     A general step-up-down procedure.
SidakSD                 Sidak-like (1987) step-down procedure
TSBKY_pi0_est           Two-step estimation method of Benjamini,
                        Krieger and Yekutieli for estimating pi0
adaptiveBH              Benjamini-Hochberg (2000) adaptive linear
                        step-up procedure
adaptiveSTS             Storey-Taylor-Siegmund (2004) adaptive step-up
                        procedure
adjPValuesPlot          A function plotting adjusted p-values...
aorc                    Step-up-down test based on the asymptotically
                        optimal rejection curve.
augmentation            Wrapper function to the augmentation methods of
                        the multtest package.
bonferroni              Bonferroni correction...
calculateBetaAdjustment
                        Calculating the beta adjustment factor for the
                        asymptotically optimal rejection curve.
compareMutoss           Functions for comparing outputs of different
                        procedures.
fisher22.marginal       Fisher (2x2) table association analysis for
                        calculating all marginal p-values...
fisher22_fast           Fisher (2x2) table association analysis for
                        calculating one (marginal) p-value...
fisher23.marginal       Fisher-type (2x3) table association analysis
                        for calculating all marginal p-values...
fisher23.model          Mutoss Models
fisher23_fast           Fisher-type (2x3) table association analysis
                        for calculating one (marginal) p-value...
ftest.marginal          Marginal F test
gao                     Xin Gao's non-parametric multiple test
                        procedure is applied to Data.
gatherParameters        Extracts the parameters from the
                        simulation()-Object
gatherStatistics        Gathering statistics from simulation()-Object
hochberg                Hochberg (1988) step-up procedure
holm                    Holm's (1979) step-down-procedure
hommel                  Hommel's (1988) step-up-procedure
indepBR                 Blanchard-Roquain (2009) 1-stage adaptive
                        step-up
jointCDF.orderedUnif    Joint cumulative distribution function of order
                        statistics of n iid. U(0,1)-distributed random
                        variables
linearStepUp            Linear Step Up Service Function...
mu.test.class           Test for compatible classes for comparison...
mu.test.name            Tests if all hypotheses have the same names.
mu.test.rates           Tests that different procedures used the same
                        error rates.
mu.test.same.data       Tests if the same pvalues were used by
                        different procedures.
mu.test.type            Tests that different procedures use the same
                        error types.
multcomp.wrapper        Simultaneous confidence intervals for arbitrary
                        parametric contrasts in unbalanced one-way
                        layouts.
multiple.down           Benjamini-Krieger-Yekutieli (2006) Multi-Stage
                        Step-Down
multiple.down.adjust    A service function used by multiple...
mutoss.apply            Applies a function to a Mutoss object.
mutoss.plotCI           mutoss.plotCI
notterman               Notterman data set
nparcomp                Simultaneous confidence intervals for relative
                        contrast effects...
nparcomp.wrapper        Simultaneous confidence intervals for relative
                        contrast effects...
onesamp.marginal        Marginal one sample test
oracleBH                Bejamini-Hochberg (2000) oracle linear step-up
                        Procedure...
pValuesPlot             A function plotting p-values...
paired.marginal         Marginal paired two sample test
printRejected           Internal MuTossProjekt-Function
pval2locfdr             Strimmer et al.'s fdrtool-based local fdr
pval2qval               Strimmer et al.'s fdrtool-based q-values
ranktruncated           Rank truncated p-Value procedure...
regwq                   REGWQ - Ryan / Einot and Gabriel / Welsch test
                        procedure...
reject                  reject
requireLibrary          Tries to load a package.
rom                     Rom's (1990) step-up-procedure.
sidak                   Sidak correction
simulation              Simulation studies
snk                     Student - Newman - Keuls rejective test
                        procedure.
storey_pi0_est          Storey-Taylor-Siegmund estimation of pi0
                        (finite sample version)
tukey.wrapper           Tukey HSD test and simultaneous confidence
                        intervals for all pairs comparisons...
two.stage               A p-value procedure which controls the FDR for
                        independent test statistics.
twosamp.marginal        Marginal two sample test
twostageBR              Blanchard-Roquain (2009) 2-stage adaptive
                        step-up...
