animPlot                Animation plot
animPlotGif             Generates a GIF animating
applyGaussianKernelwithVariableSigma
                        Apply Gaussian Kernel using Laleh Haghverdi's
                        variable sigma
bgGeneNorm              Normalise by background gene set
calculateVariableSigmas
                        Calculates sigmas for a distance matrix
colGrad                 Generates a smooth colour gradient
diffuseMat              Generic diffusion function
diffuseProj             Predicts diffusion map projection from new data
                        points
fastDist                Fast vectorised Euclidean distance calculator
filterGenes             Filter genes
findLouvain             Louvain clustering on transition matrix
fnc                     Find next cell function
getTraj                 Find a plausible developmental journey
goggles                 View single cell dataset
sparseMarkov            Make markov matrix sparse
