Marine Benthic Ecosystem Analysis

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Documentation for package ‘benthos’ version 2.0-0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

benthos-package	Marine Benthic Ecosystem Analysis
.pool	Pooling
abundance	Abundance
ambi	AZTI Marine Biotic Index (AMBI)
as_accepted	Convert Taxon Names to Comply with WoRMS/TWN
benthos	Marine Benthic Ecosystem Analysis
bray_curtis	Bray-Curtis Dissimilarity
eqr	Ecological Quality Ratio (EQR)
generic_name	Binomial Names
genus_to_species	Genus to Species Conversion
get_ambi	Get Supplementary AMBI Sensitivity Groups
get_iti	Get Infaunal Trophic Index
get_taxa	Read and Validate Taxa Data
get_worms	Read and Validate Taxa Waterbeheer Nederland (TWN) Data
harmonize	Harmonize Case
has_ambi	AZTI Marine Biotic Index (AMBI)
has_iti	Infaunal Trophic Index (ITI)
hill	Hill's Diversity Numbers
hill0	Hill's Diversity Numbers
hill1	Hill's Diversity Numbers
hill2	Hill's Diversity Numbers
hpie	Hurlbert's Probability of Interspecific Encounter (PIE)
hurlbert	Hurlbert's Expected Number of Species
is_accepted	Convert Taxon Names to Comply with WoRMS
is_azoic	Test for Azoic Samples
is_binomen	Binomial Names
is_worms	Convert Taxon Names to Comply with WoRMS
is_worms_	Convert Taxon Names to Comply with WoRMS
iti	Infaunal Trophic Index (ITI)
lnn	Total Abundance
margalef	Margalef Index of Diversity
northsea	MWTL North Sea Bentos Data
oosterschelde	Oosterschelde Marine Benthos Data
pool	Pooling
read_ambi	Read and Validate AMBI Sensitivity Data
read_beqi2	Read and Validate BEQI2 Input Files
read_iti	Read and Validate Infaunal Trophic Index Files
read_ref	Read and Validate Habitat References Files
read_taxa	Read and Validate Taxa Data
read_twn	Read and Validate Taxa Waterbeheer Nederland (TWN) Data
rygg	Rygg's Index of Diversity
shannon	Shannon's Index or Entropy
simpson	Simpson's Measure of Concentration
species_richness	Species Richness
specific_name	Binomial Names
strip_sp	Binomial Names
strip_spaces	Remove Redundant Spaces
total_abundance	Total Abundance
to_worms	Convert Taxon Names to Comply with WoRMS
validate_ambi	Read and Validate AMBI Sensitivity Data
validate_beqi2	Read and Validate BEQI2 Input Files
validate_iti	Read and Validate Infaunal Trophic Index Files
validate_ref	Read and Validate Habitat References Files
validate_taxa	Read and Validate Taxa Data
validate_twn	Read and Validate Taxa Waterbeheer Nederland (TWN) Data