# The P-Model and BiomeE Modelling Framework

## Documentation for package ‘rsofun’ version 5.1.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

biomee_gs_leuning_drivers | rsofun BiomeE driver data (Leuning photosynthesis model)
biomee_gs_leuning_output | rsofun BiomeE (gs_leuning) output data
biomee_p_model_drivers | rsofun BiomeE driver data (P-model photosynthesis model)
biomee_p_model_luluc_drivers | rsofun BiomeE driver data (P-model photosynthesis model) with LULUC
biomee_p_model_luluc_output | rsofun BiomeE (P-model) output data
biomee_p_model_output | rsofun BiomeE (P-model) output data
biomee_validation | rsofun BiomeE targets validation data
build_luc_matrix | Build LUC matrix
calib_sofun | Calibrates SOFUN model parameters
cost_likelihood_biomee | Log-likelihood cost function for BiomeE with different targets
cost_likelihood_pmodel | Cost function computing a log-likelihood for calibration of P-model parameters
cost_rmse_biomee | RMSE cost function for BiomeE
cost_rmse_pmodel | Cost function computing RMSE for calibration of P-model parameters
init_dates_dataframe | Initialises a tibble with dates
p_model_drivers | rsofun P-model driver data
p_model_drivers_vcmax25 | rsofun P-model driver data (for leaf traits)
p_model_output | rsofun P-model output data
p_model_output_vcmax25 | rsofun P-model output data (using vcmax25 drivers)
p_model_validation | rsofun P-model GPP validation data
p_model_validation_vcmax25 | rsofun P-model Vcmax25 validation data
runread_biomee_f | Run BiomeE
runread_pmodel_f | Run P-model
run_biomee_f_bysite | Run BiomeE (R wrapper)
run_pmodel_f_bysite | Run P-model (time series)
run_pmodel_onestep_f_bysite | Run P-model (single time step)