# Analyzing and Visualizing Multidimensional Plant Traits

## Documentation for package ‘MultiTraits’ version 1.0.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

average_interlayer_clustering_coefficient | Average Interlayer Clustering Coefficient for Plant Trait Multilayer Networks
average_interlayer_path_length | Calculate Average Interlayer Path Length (AIPL) for Plant Trait Multilayer Networks
crosslayer_module_assoc | Calculate Module Interlayer Association (MIA) for Plant Trait Multilayer Networks
cross_layer_groups | Identify Cross-Layer Modules in Plant Trait Multilayer Networks
CSR | Classify Plant Strategies using Pierce et al. (2017) CSR Method
CSR_hodgson | Classify Plant Strategies using Hodgson et al. (1999) CSR Method
CSR_plot | Create a Ternary Plot for CSR Plant Ecological Strategies
forest_invader_traits | Forest Woody Invader Functional Traits Dataset
forest_invader_tree | Phylogenetic tree for forest invader trait analysis
interlayer_closeness | Calculate Interlayer Closeness for Plant Trait Multilayer Network Nodes
interlayer_clustering_coefficient | Calculate Interlayer Clustering Coefficient for Plant Trait Multilayer Networks (PTMNs)
interlayer_degree | Calculate Interlayer Degree for Nodes in Plant Trait Multilayer Networks
interlayer_edge_density | Calculate Interlayer Edge Density for Plant Trait Multilayer Networks
LHS | Calculate LHS (Leaf-Height-Seed) Plant Ecological Strategy Classification
LHS_plot | Create 3D Scatter Plot for LHS Plant Ecological Strategy Data
LHS_strategy_scheme | Create a table of Leaf-Height-Seed (LHS) strategy types
NPT_continuous | Continuous Niche Classification Based on Periodic Table of Niches
NPT_continuous_plot | Plot Continuous Niche Classification Results
NPT_discrete | Discrete Niche Classification Based on Periodic Table of Niches
NPT_discrete_plot | Visualize Discrete Niche Classification Tree
PFF | Plant Functional Traits Dataset from Ponderosa Pine Forests Flora (PFF)
PFF_tree | Phylogenetic Tree of 133 Plant Species from Pine Forest Flora
phylo_correlation | Phylogenetically Corrected Correlation Analysis
PTMN | Plant Trait Multilayer Network Analysis
PTMN_metrics | Calculate Plant Trait Multilayer Network (PTMN) Metrics
PTMN_plot | Plot Plant Trait Multilayer Networks (PTMN)
PTN | Generate Plant Trait Network
PTN_corr | Calculate and Visualize Plant Trait Correlation Network
PTN_metrics | Calculate Node and Global Metrics for Trait Networks
PTN_plot | Plot Trait Network Graph