Last updated on 2025-05-21 05:51:47 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.5.1 | 7.16 | 753.50 | 760.66 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.5.1 | 4.46 | 523.74 | 528.20 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.0 | 748.26 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.0 | 820.60 | OK | |||
| r-devel-windows-x86_64 | 0.5.1 | 9.00 | 457.00 | 466.00 | OK | |
| r-patched-linux-x86_64 | 0.5.1 | 6.19 | 714.64 | 720.83 | OK | |
| r-release-linux-x86_64 | 0.5.1 | 6.36 | 718.93 | 725.29 | OK | |
| r-release-macos-arm64 | 0.5.1 | 260.00 | OK | |||
| r-release-macos-x86_64 | 1.0.0 | 448.00 | OK | |||
| r-release-windows-x86_64 | 1.0.0 | 10.00 | 454.00 | 464.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.0 | 57.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 1.0.0 | 528.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 0.5.1 | 11.00 | 665.00 | 676.00 | NOTE |
Version: 1.0.0
Check: installed package size
Result: NOTE
installed size is 6.0Mb
sub-directories of 1Mb or more:
doc 4.0Mb
help 1.8Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.0.0
Check: DESCRIPTION meta-information
Result: NOTE
Packages listed in more than one of Depends, Imports, Suggests, Enhances:
‘reactable’ ‘DT’
A package should be listed in only one of these fields.
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [2s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(CohortCharacteristics)
>
> test_check("CohortCharacteristics")
Starting 2 test processes
Error in `private$handle_error()`:
! testthat subprocess failed to start, stderr:
ℹ `EUNOMIA_DATA_FOLDER` set to:
'/var/folders/k4/0jwzxmln0nb8y6rkzprptb640000gq/T//RtmpBm1JVj'.
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==========================
downloaded 3.5 MB
Error in `FUN()`:
! In path: "/Volumes/Builds/packages/big-sur-arm64/results/4.4/CohortCharacteristics.Rcheck/tests/testthat/setup.R"
Caused by error in `utils::download.file()`:
! download from 'https://example-data.ohdsi.dev/GiBleed.zip' failed
Backtrace:
▆
1. ├─global callr_startup_hook()
2. │ └─asNamespace("testthat")$queue_process_setup(...)
3. │ └─asNamespace("testthat")$test_files_setup_state(...)
4. │ └─testthat::source_test_setup(".", env)
5. │ └─testthat::source_dir(path, "^setup.*\\.[rR]$", env = env, wrap = FALSE)
6. │ └─base::lapply(...)
7. │ └─testthat (local) FUN(X[[i]], ...)
8. │ └─testthat::source_file(path, env = env, chdir = chdir, wrap = wrap)
9. │ ├─base::withCallingHandlers(...)
10. │ └─base::eval(exprs, env)
11. │ └─base::eval(exprs, env)
12. │ └─CDMConnector::requireEunomia() at tests/testthat/setup.R:1:1
13. │ └─CDMConnector::downloadEunomiaData(...)
14. │ ├─withr::with_options(...)
15. │ │ └─base::force(code)
16. │ └─utils::download.file(...)
17. └─base::.handleSimpleError(...)
18. └─testthat (local) h(simpleError(msg, call))
19. └─rlang::abort(...)
Warning messages:
1: In utils::download.file(url = url, destfile = file.path(pathToData, :
downloaded length 3635387 != reported length 6754786
2: In utils::download.file(url = url, destfile = file.path(pathToData, :
URL 'https://example-data.ohdsi.dev/GiBleed.zip': status was 'Failed writing received data to disk/application'
Ran 4/4 deferred expressions
Error in deferred_run(env) : could not find function "deferred_run"
Calls: <Anonymous>
Caused by error:
! R session crashed with exit code 1
Backtrace:
▆
1. └─testthat::test_check("CohortCharacteristics")
2. └─testthat::test_dir(...)
3. └─testthat:::test_files(...)
4. └─testthat:::test_files_parallel(...)
5. ├─withr::with_dir(...)
6. │ └─base::force(code)
7. ├─testthat::with_reporter(...)
8. │ └─base::tryCatch(...)
9. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
10. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
11. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
12. └─testthat:::parallel_event_loop_chunky(queue, reporters, ".")
13. └─queue$poll(Inf)
14. └─base::lapply(...)
15. └─testthat (local) FUN(X[[i]], ...)
16. └─private$handle_error(msg, i)
17. └─rlang::abort(...)
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 1.0.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘summarise_characteristics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
Quitting from summarise_characteristics.Rmd:26-54 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `h()`:
! error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': cannot open the connection
---
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb(), dbdir = eunomiaDir())
2. ├─duckdb::dbConnect(duckdb(), dbdir = eunomiaDir())
3. │ └─duckdb (local) .local(drv, ...)
4. │ └─duckdb:::path_normalize(dbdir)
5. ├─CDMConnector::eunomiaDir()
6. │ ├─DBI::dbConnect(duckdb::duckdb(datasetLocation))
7. │ └─duckdb::duckdb(datasetLocation)
8. │ └─duckdb:::path_normalize(dbdir)
9. │ └─base::writeLines(character(), out)
10. │ └─base::file(con, "w")
11. └─base::.handleSimpleError(...)
12. └─base (local) h(simpleError(msg, call))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'summarise_characteristics.Rmd' failed with diagnostics:
error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': cannot open the connection
--- failed re-building ‘summarise_characteristics.Rmd’
--- re-building ‘summarise_cohort_overlap.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
Quitting from summarise_cohort_overlap.Rmd:29-62 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `h()`:
! error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': cannot open the connection
---
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb(), dbdir = eunomiaDir())
2. ├─duckdb::dbConnect(duckdb(), dbdir = eunomiaDir())
3. │ └─duckdb (local) .local(drv, ...)
4. │ └─duckdb:::path_normalize(dbdir)
5. ├─CDMConnector::eunomiaDir()
6. │ ├─DBI::dbConnect(duckdb::duckdb(datasetLocation))
7. │ └─duckdb::duckdb(datasetLocation)
8. │ └─duckdb:::path_normalize(dbdir)
9. │ └─base::writeLines(character(), out)
10. │ └─base::file(con, "w")
11. └─base::.handleSimpleError(...)
12. └─base (local) h(simpleError(msg, call))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'summarise_cohort_overlap.Rmd' failed with diagnostics:
error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': cannot open the connection
--- failed re-building ‘summarise_cohort_overlap.Rmd’
--- re-building ‘summarise_cohort_timing.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
Quitting from summarise_cohort_timing.Rmd:27-60 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'summarise_cohort_timing.Rmd' failed with diagnostics:
rapi_execute: Failed to run query
Error: FATAL Error: Failed to create checkpoint because of error: Could not write file "/private/var/folders/k4/0jwzxmln0nb8y6rkzprptb640000gq/T/RtmpKC5V2b/GiBleed_5.3_1.2.duckdb": No space left on device
--- failed re-building ‘summarise_cohort_timing.Rmd’
--- re-building ‘summarise_large_scale_characteristics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
Quitting from summarise_large_scale_characteristics.Rmd:33-53 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'summarise_large_scale_characteristics.Rmd' failed with diagnostics:
rapi_execute: Failed to run query
Error: FATAL Error: Failed to create checkpoint because of error: Could not write file "/private/var/folders/k4/0jwzxmln0nb8y6rkzprptb640000gq/T/Rtmpu5ZjyE/GiBleed_5.3_1.2.duckdb": No space left on device
--- failed re-building ‘summarise_large_scale_characteristics.Rmd’
SUMMARY: processing the following files failed:
‘summarise_characteristics.Rmd’ ‘summarise_cohort_overlap.Rmd’
‘summarise_cohort_timing.Rmd’
‘summarise_large_scale_characteristics.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.5.1
Check: installed package size
Result: NOTE
installed size is 5.6Mb
sub-directories of 1Mb or more:
doc 3.5Mb
help 1.9Mb
Flavor: r-oldrel-windows-x86_64