Last updated on 2026-02-12 04:52:26 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 4.3-4-5 | OK | ||||
| r-devel-linux-x86_64-debian-gcc | 4.3-4-5 | 39.73 | 330.62 | 370.35 | OK | |
| r-devel-linux-x86_64-fedora-clang | 4.3-4-5 | 105.00 | 767.84 | 872.84 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 4.3-4-5 | 103.00 | 750.69 | 853.69 | OK | |
| r-devel-macos-arm64 | 4.3-4-5 | 15.00 | 97.00 | 112.00 | ERROR | |
| r-devel-windows-x86_64 | 4.3-4-5 | 63.00 | 420.00 | 483.00 | OK | |
| r-patched-linux-x86_64 | 4.3-4-5 | 59.52 | 456.95 | 516.47 | OK | |
| r-release-linux-x86_64 | 4.3-4-5 | 61.70 | 461.85 | 523.55 | OK | |
| r-release-macos-arm64 | 4.3-4-5 | 14.00 | 111.00 | 125.00 | OK | |
| r-release-macos-x86_64 | 4.3-4-5 | 44.00 | 658.00 | 702.00 | OK | |
| r-release-windows-x86_64 | 4.3-4-5 | 67.00 | 446.00 | 513.00 | NOTE | |
| r-oldrel-macos-arm64 | 4.3-4-5 | 16.00 | 115.00 | 131.00 | OK | |
| r-oldrel-macos-x86_64 | 4.3-4-5 | 44.00 | 630.00 | 674.00 | OK | |
| r-oldrel-windows-x86_64 | 4.3-4-5 | 87.00 | 565.00 | 652.00 | OK |
Version: 4.3-4-5
Check: examples
Result: ERROR
Running examples in ‘biomod2-Ex.R’ failed
The error most likely occurred in:
> ### Name: bm_CrossValidation
> ### Title: Build cross-validation table
> ### Aliases: bm_CrossValidation bm_CrossValidation_user.defined
> ### bm_CrossValidation_user.defined,BIOMOD.formated.data-method
> ### bm_CrossValidation_user.defined,BIOMOD.formated.data.PA-method
> ### bm_CrossValidation_random
> ### bm_CrossValidation_random,BIOMOD.formated.data-method
> ### bm_CrossValidation_random,BIOMOD.formated.data.PA-method
> ### bm_CrossValidation_kfold
> ### bm_CrossValidation_kfold,BIOMOD.formated.data-method
> ### bm_CrossValidation_kfold,BIOMOD.formated.data.PA-method
> ### bm_CrossValidation_block
> ### bm_CrossValidation_block,BIOMOD.formated.data-method
> ### bm_CrossValidation_block,BIOMOD.formated.data.PA-method
> ### bm_CrossValidation_strat
> ### bm_CrossValidation_strat,BIOMOD.formated.data-method
> ### bm_CrossValidation_strat,BIOMOD.formated.data.PA-method
> ### bm_CrossValidation_env
> ### bm_CrossValidation_env,BIOMOD.formated.data-method
> ### bm_CrossValidation_env,BIOMOD.formated.data.PA-method
>
> ### ** Examples
>
> library(terra)
terra 1.8.93
Attaching package: ‘terra’
The following object is masked from ‘package:plotrix’:
rescale
>
> # Load species occurrences (6 species available)
> data(DataSpecies)
> head(DataSpecies)
X_WGS84 Y_WGS84 ConnochaetesGnou GuloGulo PantheraOnca PteropusGiganteus
1 -94.5 82.00001 0 0 0 0
2 -91.5 82.00001 0 1 0 0
3 -88.5 82.00001 0 1 0 0
4 -85.5 82.00001 0 1 0 0
5 -82.5 82.00001 0 1 0 0
6 -79.5 82.00001 0 1 0 0
TenrecEcaudatus VulpesVulpes
1 0 0
2 0 0
3 0 0
4 0 0
5 0 0
6 0 0
>
> # Select the name of the studied species
> myRespName <- 'GuloGulo'
>
> # Get corresponding presence/absence data
> myResp <- as.numeric(DataSpecies[, myRespName])
>
> # Get corresponding XY coordinates
> myRespXY <- DataSpecies[, c('X_WGS84', 'Y_WGS84')]
>
> # Load environmental variables extracted from BIOCLIM (bio_3, bio_4, bio_7, bio_11 & bio_12)
> data(bioclim_current)
> myExpl <- terra::rast(bioclim_current)
>
> ## Don't show:
> myExtent <- terra::ext(0,30,45,70)
> myExpl <- terra::crop(myExpl, myExtent)
> ## End(Don't show)
>
> # --------------------------------------------------------------- #
> # Format Data with true absences
> myBiomodData <- BIOMOD_FormatingData(resp.name = myRespName,
+ resp.var = myResp,
+ resp.xy = myRespXY,
+ expl.var = myExpl)
-=-=-=-=-=-=-=-=-=-=-=-=-=-= GuloGulo Data Formating -=-=-=-=-=-=-=-=-=-=-=-=-=-=
!!! Some data are located in the same raster cell.
Please set `filter.raster = TRUE` if you want an automatic filtering.
! Some NAs have been automatically removed from your data
-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= Done -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
>
> # --------------------------------------------------------------- #
> # Create the different validation datasets
>
> # random selection
> cv.r <- bm_CrossValidation(bm.format = myBiomodData,
+ strategy = "random",
+ nb.rep = 3,
+ k = 0.8)
Checking Cross-Validation arguments...
> Random cross-validation selection
>
> # k-fold selection
> cv.k <- bm_CrossValidation(bm.format = myBiomodData,
+ strategy = "kfold",
+ nb.rep = 2,
+ k = 3)
Checking Cross-Validation arguments...
> k-fold cross-validation selection
>
> # block selection
> cv.b <- bm_CrossValidation(bm.format = myBiomodData,
+ strategy = "block")
Checking Cross-Validation arguments...
> Block cross-validation selectionError in .local(bm.format, ...) : Package 'ENMeval' not found
Calls: bm_CrossValidation ... bm_CrossValidation_block -> bm_CrossValidation_block -> .local
Execution halted
Flavor: r-devel-macos-arm64
Version: 4.3-4-5
Check: whether startup messages can be suppressed
Result: NOTE
Torch libraries are installed but loading them was unsuccessful.
It looks like this package (or a package it requires) has a startup
message which cannot be suppressed: see ?packageStartupMessage.
Flavor: r-release-windows-x86_64