Last updated on 2026-03-01 04:51:52 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.0.5 | 6.39 | 346.85 | 353.24 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.0.5 | 5.41 | 71.05 | 76.46 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.0.5 | 14.00 | 625.61 | 639.61 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.0.5 | 11.00 | 557.23 | 568.23 | OK | |
| r-devel-macos-arm64 | 0.0.5 | 2.00 | 26.00 | 28.00 | OK | |
| r-devel-windows-x86_64 | 0.0.5 | 12.00 | 369.00 | 381.00 | OK | |
| r-patched-linux-x86_64 | 0.0.5 | 7.54 | 346.22 | 353.76 | OK | |
| r-release-linux-x86_64 | 0.0.5 | 7.64 | 346.32 | 353.96 | OK | |
| r-release-macos-arm64 | 0.0.5 | 2.00 | 27.00 | 29.00 | OK | |
| r-release-macos-x86_64 | 0.0.5 | 6.00 | 157.00 | 163.00 | OK | |
| r-release-windows-x86_64 | 0.0.5 | 13.00 | 380.00 | 393.00 | OK | |
| r-oldrel-macos-arm64 | 0.0.5 | 2.00 | 30.00 | 32.00 | NOTE | |
| r-oldrel-macos-x86_64 | 0.0.5 | 7.00 | 168.00 | 175.00 | NOTE | |
| r-oldrel-windows-x86_64 | 0.0.5 | 16.00 | 460.00 | 476.00 | NOTE |
Version: 0.0.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘ivolcano.qmd’ using html
<1b>[31m
processing file: ivolcano.qmd
<1b>[39m<1b>[31mError:
! lexical error: invalid char in json text.
<?xml version="1.0" encoding="U
(right here) ------^
Backtrace:
▆
1. └─fanyi::gene_summary(top_eg)
2. └─fanyi:::gene_summary_ncbi(entrez)
3. └─fanyi:::.get_entrez_summary(newitem)
4. └─rentrez::entrez_summary(db = "gene", id = entrez)
5. └─rentrez:::parse_response(response, retmode)
6. └─jsonlite::fromJSON(x)
7. └─jsonlite:::parse_and_simplify(...)
8. └─jsonlite:::parseJSON(txt, bigint_as_char)
9. └─jsonlite:::parse_string(txt, bigint_as_char)
<1b>[39m<1b>[31m
Quitting from ivolcano.qmd:105-125 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! lexical error: invalid char in json text.
<?xml version="1.0" encoding="U
(right here) ------^
---
Backtrace:
▆
1. └─fanyi::gene_summary(top_eg)
2. └─fanyi:::gene_summary_ncbi(entrez)
3. └─fanyi:::.get_entrez_summary(newitem)
4. └─rentrez::entrez_summary(db = "gene", id = entrez)
5. └─rentrez:::parse_response(response, retmode)
6. └─jsonlite::fromJSON(x)
7. └─jsonlite:::parse_and_simplify(...)
8. └─jsonlite:::parseJSON(txt, bigint_as_char)
9. └─jsonlite:::parse_string(txt, bigint_as_char)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Execution halted
<1b>[39m<1b>[33mWARN: Error encountered when rendering files<1b>[39m
Error: processing vignette 'ivolcano.qmd' failed with diagnostics:
! Error running quarto CLI from R.
Caused by error in `quarto_render()`:
✖ Error returned by quarto CLI.
-----------------------------
processing file: ivolcano.qmd
<1b>[31mError:<1b>[39m
! lexical error: invalid char in json text.
<?xml version="1.0" encoding="U
(right here) ------^
Backtrace:
▆
1. └─fanyi::gene_summary(top_eg)
2. └─fanyi:::gene_summary_ncbi(entrez)
3. └─fanyi:::.get_entrez_summary(newitem)
4. └─rentrez::entrez_summary(db = "gene", id = entrez)
5. └─rentrez:::parse_response(response, retmode)
6. └─jsonlite::fromJSON(x)
7. └─jsonlite:::parse_and_simplify(...)
8. └─jsonlite:::parseJSON(txt, bigint_as_char)
9. └─jsonlite:::parse_string(txt, bigint_as_char)
Quitting from ivolcano.qmd:105-125 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! lexical error: invalid char in json text.
<?xml version="1.0" encoding="U
(right here) ------^
---
Backtrace:
▆
1. └─fanyi::gene_summary(top_eg)
2. └─fanyi:::gene_summary_ncbi(entrez)
3. └─fanyi:::.get_entrez_summary(newitem)
4. └─rentrez::entrez_summary(db = "gene", id = entrez)
5. └─rentrez:::parse_response(response, retmode)
6. └─jsonlite::fromJSON(x)
7. └─jsonlite:::parse_and_simplify(...)
8. └─jsonlite:::parseJSON(txt, bigint_as_char)
9. └─jsonlite:::parse_string(txt, bigint_as_char)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Execution halted
<1b>[33mWARN: Error encountered when rendering files<1b>[39m
Caused by error:
! System command 'quarto' failed
--- failed re-building ‘ivolcano.qmd’
SUMMARY: processing the following file failed:
‘ivolcano.qmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.0.5
Check: installed package size
Result: NOTE
installed size is 41.7Mb
sub-directories of 1Mb or more:
doc 40.6Mb
extdata 1.0Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64