BioMonTools: Biomonitoring and Bioassessment Calculations

An aid for manipulating data associated with biomonitoring and bioassessment. Calculations include metric calculation, marking of excluded taxa, subsampling, and multimetric index calculation. Targeted communities are benthic macroinvertebrates, fish, periphyton, and coral. As described in the Revised Rapid Bioassessment Protocols (Barbour et al. 1999) <https://archive.epa.gov/water/archive/web/html/index-14.html>.

Version: 1.2.4
Depends: R (≥ 3.5)
Imports: dplyr, maps, rlang, stats, tidyselect, tidyr
Suggests: DataExplorer, DT, ggplot2, knitr, lazyeval, readxl, reshape2, rmarkdown, testthat, shiny, shinydashboard, shinydashboardPlus, shinyjs, shinyWidgets, utils, writexl, shinyalert
Published: 2025-10-09
DOI: 10.32614/CRAN.package.BioMonTools (may not be active yet)
Author: Erik W. Leppo ORCID iD [aut, cre], Jen Stamp [ctb], John van Sickles [ctb], Ben Block [ctb]
Maintainer: Erik W. Leppo <Erik.Leppo at tetratech.com>
BugReports: https://github.com/leppott/BioMonTools/issues
License: MIT + file LICENSE
URL: https://github.com/leppott/BioMonTools
NeedsCompilation: no
Materials: README, NEWS
CRAN checks: BioMonTools results

Documentation:

Reference manual: BioMonTools.html , BioMonTools.pdf
Vignettes: BioMonTools (source, R code)
Taxa Maps (source, R code)
Add New Index (source, R code)

Downloads:

Package source: BioMonTools_1.2.4.tar.gz
Windows binaries: r-devel: not available, r-release: not available, r-oldrel: not available
macOS binaries: r-release (arm64): BioMonTools_1.2.4.tgz, r-oldrel (arm64): BioMonTools_1.2.4.tgz, r-release (x86_64): BioMonTools_1.2.4.tgz, r-oldrel (x86_64): BioMonTools_1.2.4.tgz

Linking:

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